ID: example_plink1

Target Descriptives

  • The target sample contains 12 individuals.
  • The target genotype data was provided in plink1 format.
  • Of the 17679 variants in the reference, 17679 were available in the target (100%).

Ancestry

  • 12 out of 12 target individuals in the sample, were assigned to a reference population with a probability >50%.
  • The number of individuals assigned to each population were:


Show principal component plots

Target Principal Component Scores Compared to Reference Populations.

Note. Black circles indicate target sample individuals.

Polygenic Scores

  • 2 GWAS summary statistics were provided for polygenic scoring.
  • 2 PGS methods were applied, including dbslmm, ptclump.
  • 3 external score files were provided for polygenic scoring.

GWAS summary statistics

Score files

Note. The Pass column indicates whether a sufficient number of variants within the score file were present in the reference data.

PGS Distribution

dbslmm

Density plot of PGS from dbslmm
Density plot of PGS from dbslmm

ptclump

Density plot of PGS from ptclump
Density plot of PGS from ptclump

external

Density plot of PGS from external
Density plot of PGS from external

This report was created using GenoPred (v2.2.2-67-g53c5c77).